Does the tail wag the dog? How the structure of a glycosylphosphatidylinositol anchor affects prion formation

There is increasing interest in the role of the glycosylphosphatidylinositol (GPI) anchor attached to the cellular prion protein (PrP(C)). Since GPI anchors can alter protein targeting, trafficking and cell signaling, our recent study examined how the structure of the GPI anchor affected prion formation. PrP(C) containing a GPI anchor from which the sialic acid had been removed (desialylated PrP(C)) was not converted to PrP(Sc) in prion-infected neuronal cell lines and in scrapie-infected primary cortical neurons. In uninfected neurons desialylated PrP(C) was associated with greater concentrations of gangliosides and cholesterol than PrP(C). In addition, the targeting of desialylated PrP(C) to lipid rafts showed greater resistance to cholesterol depletion than PrP(C). The presence of desialylated PrP(C) caused the dissociation of cytoplasmic phospholipase A(2) (cPLA(2)) from PrP-containing lipid rafts, reduced the activation of cPLA(2) and inhibited PrP(Sc) production. We conclude that the sialic acid moiety of the GPI attached to PrP(C) modifies local membrane microenvironments that are important in PrP-mediated cell signaling and PrP(Sc) formation

A Case Study of Rock-Fluid Interaction in the Enhanced Geothermal System in Cooper Basin, South Australia

This study was undertaken to observe mineral dissolution with replacing circulating fluid with fresh water every 24 hours. This was an attempt to accelerate the dissolution rate and to mimic the condition of a geothermal site when fresh water or treated water from a precipitation tank is reinjected to the fracture. The experiments were carried out in a titanium flow through cell for 1, 7, and 28 days at 250°C and 40 bars. Water analysis was performed using ICP-MS, and rock analyses were conducted using SEM, XRD and XRF. The experimental results revealed a linear correlation of mineral (element) dissolution at the early stages of the experiment. However at later stages, the mineral dissolution proceeds at a slower rate. This may have been caused by the exhaustion of a more soluble mineral phase in the sample. Therefore, this may cause the pore size in the fracture path size to enlarge. SEM observations showed evidence of etching of the mineral surfaces consistent with partial dissolution. SEM backscattered images reveals that mostly quartz phase (SiO₂) remains after 28 days of circulation. XRD results complement these finding, that quartz was stable throughout the experiment, and that the albite-feldspar (NaAlSi₃O₈) and microcline (KALSi₃O₈) in the rock had partially dissolved. As well, ICP-MS analysis of water samples confirmed that some mineral dissolution occurred. XRF study was used to generate an elemental mass balance. Determination of the dissolution kinetics of the various minerals phase is being undertaken.Gideon Kuncoro, Yung Ngothai, Brian O'Neill, Allan Pring, Joël Bruggerhttp://www.chemeca2010.com/abstract/270.as

One Hundred Years Later: Stern-Gerlach Experiment and Dimension Witnesses

Inspired by the one-hundredth anniversary of the seminal works of Stern and Gerlach, our contribution is a proposal of how to use their famous experiment in a more contemporary perspective. Our main idea is to re-cast the experiment in the modern language of prepare-and-measure scenarios. By doing so, it is possible to connect geometric and algebraic aspects of the space of states with the physical space. We also discuss possible simulations of the SG experiment as well as some experimental properties of the experiment revealed at the statistical level. Merging a more modern perspective with a paradigmatic experiment, we hope this paper can serve as an entry door for quantum information theory and the foundations of quantum mechanics.Comment: 23 pages, 6 figures. Minor adjustments, according to referee suggestion

The Impact of Vacuum Gate Valves on the LHC Beam

The LHC vacuum sector valves are located in the straight sections of the LHC ring, and designed to sectorize the LHC vacuum. The valves are interlocked and should trigger a beam dump request if they close on a circulating beam. This report studies the impact on the machine if this request is not made and the valve scrapes the LHC beam halo. Cascade calculations are made using a model of IR7, with several different valve locations, to calculate the downstream energy deposition in superconducting magnet coils and the corresponding signal in beam loss monitors at the quench level. The calculations are done at 7, 5, and 3.5 TeV. It is found that when a downstream magnet reaches the quench level, the neighbouring BLMs see a signal well above the detection threshold. Furthermore, the BLM signal is consistent with the BLM applied threshold settings and a signal is seen in the time domain before the quench level is reached. Therefore the report concludes that the BLMs can see the closing valve and trigger a beam dump before the quench (or damage) level is reached

Variations in air quality of new Ohio dairy facilities with natural ventilation systems

As dairy operations evolve towards larger, concentrated facilities, air quality on and around the dairy farms becomes a concern. Data on air quality in and around large dairy facilities are insufficient and therefore very much needed. In this study, preliminary data on air quality spatial distribution and temporal variations on two new large dairy facilities with naturally ventilated free stall barns and outside manure storage were collected. Concentration of hydrogen sulfide (H2S) and ammonia (NH3) at 12 to 14 locations on each farm were measured in three seasons using portable gas analyzers. Odor samples were collected at odor sources, upwind and downwind locations. Dust was measured using a portable dust mass concentration meter Gas levels inside the dairy buildings at one leeward location were continuously monitored for three days in two seasons. In addition, indoor and outdoor temperature, relative humidity, and air velocity were measured to determine effects of these parameters on air quality. The study found that manure storage ponds have the most effect on air quality during warm and hot seasons. Variations of air quality inside the dairy building were insignificant. Inside the dairy buildings, the average dust mass concentrations range from 0.9 to 1.5 mg m(-3); ammonia 1.4 to 3 ppm, hydrogen sulfide 2 to 32 ppb; and odor concentration 90 to 140 OU m(-3). However at the downwind berm of the manure storage ponds, odor concentration reached 1256 OU/m(3) during the hot weather months. Weather conditions also affected the outdoor dispersion of air emissions. Most of the time, gas levels at 152 m downwind of the barn and manure storage were similar to upwind levels, but on hot and windy days these levels reached a point high enough to raise concerns. Inside the building, the hydrogen sulfide concentrations were not significantly different from hour to hour within a day or from day to day within a season. Although daily variation of mean ammonia concentrations were significantly different, hourly mean ammonia concentrations were not significantly different between morning hours and afternoon hours within any given day

Unit cell of graphene on Ru(0001): a 25 x 25 supercell with 1250 carbon atoms

The structure of a single layer of graphene on Ru(0001) has been studied using surface x-ray diffraction. A surprising superstructure has been determined, whereby 25 x 25 graphene unit cells lie on 23 x 23 unit cells of Ru. Each supercell contains 2 x 2 crystallographically inequivalent subcells caused by corrugation. Strong intensity oscillations in the superstructure rods demonstrate that the Ru substrate is also significantly corrugated down to several monolayers, and that the bonding between graphene and Ru is strong and cannot be caused by van der Waals bonds. Charge transfer from the Ru substrate to the graphene expands and weakens the C-C bonds, which helps accommodate the in-plane tensile stress. The elucidation of this superstructure provides important information in the potential application of graphene as a template for nanocluster arrays.Comment: 9 pages, 3 figures, paper submitted to peer reviewed journa

Characterization of the Subsurface of 67P/Churyumov-Gerasimenko's Abydos Site

We investigate the structure of the subsurface of the Abydos site using a cometary nucleus model with parameters adapted to comet 67P/Churyumov-Gerasimenko and the Abydos landing site. We aim to compare the production rates derived from our model with those of the main molecules measured by Ptolemy. This will allow us to retrieve the depths at which the different molecules still exist in solid form

Searches for Stable Strangelets in Ordinary Matter: Overview and a Recent Example

Our knowledge on the possible existence in nature of stable exotic particles depends solely upon experimental observation. Guided by this general principle and motivated by theoretical hypotheses on the existence of stable particles of strange quark matter, a variety of experimental searches have been performed. We provide an introduction to the theoretical hypotheses, an overview of the past searches, and a more detailed description of a recent search for helium-like strangelets in the Earth's atmosphere using a sensitive laser spectroscopy method

Origin of molecular oxygen in Comet 67P/Churyumov-Gerasimenko

Molecular oxygen has been detected in the coma of comet 67P/Churyumov-Gerasimenko with abundances in the 1-10% range by the ROSINA-DFMS instrument on board the Rosetta spacecraft. Here we find that the radiolysis of icy grains in low-density environments such as the presolar cloud may induce the production of large amounts of molecular oxygen. We also show that molecular oxygen can be efficiently trapped in clathrates formed in the protosolar nebula, and that its incorporation as crystalline ice is highly implausible because this would imply much larger abundances of Ar and N2 than those observed in the coma. Assuming that radiolysis has been the only O2 production mechanism at work, we conclude that the formation of comet 67P/Churyumov-Gerasimenko is possible in a dense and early protosolar nebula in the framework of two extreme scenarios: (1) agglomeration from pristine amorphous icy grains/particles formed in ISM and (2) agglomeration from clathrates that formed during the disk's cooling. The former scenario is found consistent with the strong correlation between O2 and H2O observed in 67P/C-G's coma while the latter scenario requires that clathrates formed from ISM icy grains that crystallized when entering the protosolar nebula.Comment: The Astrophysical Journal Letters, in pres